Many species of bacteria grow in the mouths of animals and can form biofilms on teeth (plaque). Within plaque, the outer layers contain high levels of oxygen and the layers closest to the tooth contain low levels of oxygen. The surface of the tooth is covered in a hard layer of enamel, which can be dissolved under acidic conditions. When the enamel breaks down, the bacteria in plaque can extract nutrients from the tooth and cause cavities.

Certain types of bacteria (e.g., Streptococcus mutans) thrive in the innermost anaerobic layers of the plaque and are associated with cavities. Other types of bacteria (Streptococcus sanguinis) compete with S. mutans but are unable to thrive in acidic environments.

(a) Identify the biochemical pathway S. mutans uses for metabolizing sugar and describe how the pathway contributes to the low pH in the inner layers of plaque.

(b) Normal tooth brushing effectively removes much of the plaque from the flat surfaces of teeth but cannot reach the surfaces between teeth. Many commercial toothpastes contain alkaline components, which raise the pH of the mouth. Predict how the population sizes of S. mutans AND S. sanguinis in the bacterial community in the plaque between the teeth are likely to change when these toothpastes are used.

The pyruvate dehydrogenase complex (PDC) catalyzes the conversion of pyruvate to acetyl-CoA, a substrate for the Krebs (citric acid) cycle. The rate of pyruvate conversion is greatly reduced in individuals with PDC deficiency, a rare disorder.

(a) Identify the cellular location where PDC is most active.

(b) Make a claim about how PDC deficiency affects the amount of NADH produced by glycolysis AND the amount of NADH produced by the Krebs (citric acid) cycle in a cell. Provide reasoning to support your claims based on the position of the PDC-catalyzed reaction in the sequence of the cellular respiration

pathway.

(c) PDC deficiency is caused by mutations in the PDHA1 gene, which is located on the X chromosome. A male with PDC deficiency and a homozygous female with no family history of PDC deficiency have a male offspring. Calculate the probability that the male offspring will have PDC deficiency.

Microcystis aeruginosis is a freshwater photosynthetic cyanobacterium. When temperatures increase and nutrients are readily available in its pond habitat, M. aeruginosis undergoes rapid cell division and forms an extremely large, visible mass of cells called an algal bloom. M. aeruginosis has a short life span and is decomposed by aerobic bacteria and fungi.

Identify the metabolic pathway and the organism that is primarily responsible for the change in oxygen level in the pond between times I and II AND between times III and IV.

Researchers hypothesize that the plant compound resveratrol improves mitochondrial function. To test this hypothesis, researchers dissolve resveratrol in dimethyl sulfoxide (DMSO). The solution readily passes through cell membranes. They add the resveratrol solution to mammalian muscle cells growing in a nutrient-rich solution (culture medium) that contains glucose. They measure ATP production at several time points after the addition of the resveratrol solution and find an increase in ATP production by the muscle cells.

(a) Describe the primary advantage for a mammalian muscle cell in using aerobic respiration over fermentation.

(b) Identify an appropriate negative control for this experiment that would allow the researchers to concludemthat ATP is produced in response to the resveratrol treatment.

(c) Predict the effect on short-term ATP production when resveratrol-treated mammalian muscle cells are grown in a culture medium that lacks glucose or other sugars.

(d) The researchers find that resveratrol stimulates the production of components of the electron transport chain. The researchers claim that treatment with resveratrol will also increase oxygen consumption by the cells if glucose is not limiting. Justify the claim.