Understanding Hydrogen Bonds in Proteins

What command is used to set the protein model in Primal?

• show space carpoon

• color space smudged

• set space 2 RGS

• set space 1 RGS

Which color is used to display the ligands as sticks in the video?

• Deep salmon

• Deep blue

• Bright red

• Light green

What do the yellow dashed lines represent in the protein model?

• Hydrogen bonds

• Ionic bonds

• Van der Waals forces

• Covalent bonds

How can you adjust the visualization to show only strong hydrogen bonds?

• By increasing the protein size

• By setting a distance cutoff

• By removing all ligands

• By changing the color scheme

What is the purpose of setting a hydrogen bond cutoff distance?

• To remove all bonds from the view

• To focus on strong or weak hydrogen bonds

• To change the color of the bonds

• To visualize only specific types of bonds