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WorksheetsFinal Exam
Total questions: 75
Worksheet time: 4hrs 45mins
Stem cells are
cell that grow uncontrollably
undifferentiated and can be any type of cell
never go through cell division
only found in embryos
Stem cells can be obtained from
embryos
some adult tissues
umbilical cord blood
all of the above
What does “pluripotent” mean?
able to divide and make many different types of cells
not able to divide
can only divide and make one cell type
if it divides, it will make a cancerous tumor
Which is true about embryonic stem cells?
they no longer divide, their cell type is set and cannot change
they develop into only one type of cell
they can become any cell type in the body
they are bound in adults
How do stem cells know what type of cells to differentiate into?
the nucleus has instructions to turn some genes on and some genes off
signals from chemicals in the organism or from the environment determine which genes will be turned on and off
genes turn on and off randomly
the cell has unique DNA that determines what the cell will become
Which type of cell is unspecialized?
keratinocyte
hepatocyte
stem cell
muscle cell
Which is true about Adult Stem Cells?
They no longer undergo mitosis, their cell type is set and cannot change
They can become any cell type in the body
They are limited to the type of cell they can become
They are found in embryos
What is the role of stem cells in the body?
fight against infections
provide specialized roles in the body
used for fertility treatment
they produce new specialized cells in the body to replace old cells that are use up
Adult stem cells are
multipotent
pluripotent
totipotent
fully differentiated
As cells become more specialized
cells have access to more genes
some gene segments get lost
some genes are turned off
proliferate faster
Which of the following external stimuli dictate a stem cell’s self-renewal vs differentiation programing?
Matrix Molecules
Soluble Factors
Cell-Cell Interactions
All of the above
What process best explains how muscle cells and nerve cells develop from the same fertilized egg?
genetic engineering
survival of the fittest
differentiation
selective breeding
Protein molecules around which DNA is tightly coiled in chromatin
histones
whey
casein
hemoglobin
The difference between DNA code and the epigenome is that the DNA code is
flexible, which the epigenome is fixed for life
fixed for life, while the epigenome is flexible
determined by the environment, while the epigenome is not
determined by one’s stress level, while the epigenome is not
Epigenetics regulation include (s)
Post-translational histone modifications
DNA methylation
Expression of non-coding RNAs
Incorporation of histone variants
all of the above
Histone modifications contribute to gene regulation
histone lysine acetylation is associated with gene activation (H3-K9, K14, K18, K27, K56; H4-K5, K8, K12, K16)
histone lysine methylation is associated with gene repression (H3-K9, K27)
histone lysine methylation is associated with gene activation (H3-K4, K36, K79)
all of the above
Activated signaling cascade, e.g., kinase cascades, can alter the epigenetic landscape either directly by phosphorylating histone proteins or indirectly by modifying chromatin modifiers, such as
histone modifying enzymes
chromatin remodelers
histone chaperone proteins
all of the above
1. Estrogen signaling is mediated by epigenetic mechanisms, e.g.,
DNA methylation-mediated silencing of estrogen receptor gene
Histone deacetylation-mediated down-regulation of estrogen receptor gene
Interaction between ER and co-activators such as AT (acetyltransferase e.g. p300) in the promoter of ER-target genes
all of the above
Cytosine methylation at the 5 position on the pyrimidine ring generates 5-methyl Cytosine (5-mC). When 5-mC undergoes deamination, you get
Cytosine
Adenosine
Thymine
none of the above
While the majority of CpGs (~60-80%) are methylated, CpG-rich regions termed CpG islands are generally unmethylated (~50% of CpG are located in gene promoter regions)
True
False
What are major types of histone modifications?
H3.1
H3.2
H3.3
H3t
H3.X
What is the relationship between estrogen levels (E2) and ferritin levels during menopausal transition?
an inverse relationship in which E2 decreases and ferritin increases
a positive relationship in which they both increase with age
a positive relationship in which they both decrease with age
there is no relationship between estrogen and ferritin but rather progesterone and ferritin, and it is concurrent but inverse
Which of the following enzymes play a role in synthesis of estrogen (E2) from cholesterol?
CYP21
CYP11
P-450 aromatase
CYP1a1
Which is/are pathways of ER action?
ER dimers directly bind to EREs following ligand activation
upon ligand binding, ERs interact with other transcription factors such as AP-1 and Sp-1 through a process referred to as transcription factor cross-talk
estrogen may elicit effects through nongenomic mechanisms via ERα or GPR30 in the cell membrane, involving interactions with cytoplasmic signal transduction proteins
ER activity can be regulated through a ligand-independent pathway in which ERs are phosphorylated by activated kinases
How does 17β-estradiol (E2) affect iron absorption from the liver?
suppressed expression of hepcidin
increase expression of hepcidin
induce hepcidin degradation
bind to hepcidin to increase iron uptake
What role does BMP6 play in hepatic iron regulation?
iron carrier, presents extracellular iron to hepatocytes for sensing
binds to TfR1 and TfR2
binds to hemojuvelin
iron-specific ligand of the BMP receptor, increased by hepatic iron
What tissues are affected by estrogen and estrogen signaling?
brain, skin, heart, breast, liver, uterus, bone
brain, skin, lung, breast, pancreas, uterus, bone
brain, spleen, breast, uterus, small intestine
skin, breast, heart, uterus, colon
Which of the following is not true?
iron is required for electron transport in mitochondrian, DNA replication, and numerous other biological functions
excess iron can lead to free radicals formation and damage to cellular proteins, membranes, and DNA
iron deficiency can lead to anemic conditions
there is more iron in the bone marrow than in the liver parenchyma
Addition of iron to osteoprogenitor cells in the presence of BMP-2 (a bone morphogenic protein that stimulates osteogenic differentiation)
increased the number of progenitor cells that matured into osteoblasts but increasing Runx2 and ALP
blocked differentiation of progenitor cells to osteoblasts and suppressed BMP-2-mediated increased Runx2 and ALP expression
promoted proliferation of the osteoprogenitor cells
induced osteoprogenitor cells to differentiate into red blood cells
Increased efflux of drugs has been considered to be the major reason for chemotherapy resistance.
True
False
Tumor heterogeneity is one of mechanisms that cause drug resistance. There are several levels of heterogeneity, including
Genetic heterogeneity
Cell type heterogeneity
Metabolic heterogeneity
Temporal heterogeneity in dynamic tumor progression
all of the above
Resistance to chemotherapy continues to be a major problem in cancer therapies. Chemoresistance is generated only after the therapy which is responsible for most relapses of cancer.
True
False
Mechanisms of drug resistance do not include
Alteration of drug target
Epigenetic alterations
Tumor heterogeneity
Decreased efflux of drugs
Epigenetic alterations play important roles in drug resistance, e.g., hypomethylation of transporter ABCB1 promoter
Decreases expression of ABCB1, resulting in decreased efflux of drugs from cancer cells
Decreases expression of ABCB1, resulting in increased efflux of drugs from cancer cells
Increases expression of ABCB1, resulting in decreased efflux of drugs from cancer cells
Increases expression of ABCB1, resulting in increased efflux of drugs from cancer cells
Arsenic induces resistance to tamoxifen in breast cancer cells by
Downregulation of both ERalpha and BRAC1
Upregulation of both ERalpha and BRAC1
Downregulation of ERalpha but upregulation of BRAC1
Upregulation of ERalpha but downregulation of BRAC1
Heavy metal exposures may the sensitivity of cancer cells to chemotherapy.
increase
decrease
both increase or decrease
neither increase or decrease
Cancer cells exhibit resistance to RTK therapy due to
Disruption of interaction between drug and receptor
Activation of alternate RTK signaling
Both
Neither
A dysfunctional PI3K/AKT pathway serves as a hub to regulate drug resistance by
triggering XIAP to suppress the activity of caspase-3, inhibiting apoptosis
affecting tumor proliferation through regulating mTOR, GSK-3β, and NF-κB
altering drug efflux through effective expression of ABC transporter
all of the above
The cause of acquired drug resistance include
mutations or altered expression levels of the drug targets
inactivation of second proto-oncogene that becomes the newly emerged driver gene
changes in tumor microenvironment (TME) after treatment
all of the above
Oxidation is the ______ of electrons
loss
gain
sharing
destruction
Reduction is the _____of electrons.
loss
gain
sharing
destruction
Reactive sites of lipids for oxidation:
ester bond between glycerol and fatty acid
polyunsaturated fatty acids that contain two or more double bonds
unsaturated fatty acids
phytosterols
The presence of one or more unpaired electron in the outer orbit make free radicals highly reactive
True
False
Which is a reactive oxygen species but not a radical?
Hydroxyl
Peroxyl
Ozone
Hydroperoxyl
Which is a reactive nitrogen species and a radical?
Peroxynitrite
Nitrous Acid
Nitroxyl Anion
Nitric Oxide
Redox signaling is a process in which small redox molecules under physiological conditions modulate signal transduction, gene expression, and cellular response.
True
False
Superoxide anion O2- is only generated enzymatically by NADPH oxidase
True
False
Hydrogen Peroxide
a non-radical potent oxidizing agent primarily enzymatically generated from superoxide anion by superoxide dismutase and removed by catalase or glutathione peroxidase
a radical potent oxidizing agent that easily diffuses across biological membranes non-enzymatically generated by the intervention of redox components, such as the electron transport chain in the mitochondria
a non-radical potent oxidizing agent that cannot diffuse across biological membranes and is enzymatically generated from superoxide anion by superoxide dismutase and removed by catalase or glutathione peroxidase
none of the above
What are extracellular sources of free radicals?
virus
tobacco
chemotherapy
diet
all of the above
Which is not a consequence of lipid peroxidation following increased ROS?
structural changes in the plasma membrane
lipid peroxidation products form adducts/crosslinks with non-lipids, such as proteins and DNA
disruptions in membrane-dependent signaling
increased plasma membrane rigidity
How can oxidative damage affect DNA?
DNA base damage
DNA sugar damage
single and double-strand breaks
DNA-protein cross-links
all of the above
How can ROS/RNS affect cancer development and cancer progression?
induce DNA damage resulting in mutations and thus cancer initiating cells
increase cell proliferation
alter cell apoptosis response
promote angiogenesis
all of the above
HIF is a ________transcription factor composed of ________ alpha subunit and __________ beta subunit.
homodimeric, an oxygen-sensitive, a constitutively expressed
heterodimeric, an oxygen-sensitive, a constitutively expressed
heterodimeric, a constitutively expressed, an oxygen-sensitive
homodimeric, a constitutively expressed, an oxygen-sensitive
The HIF bHLH domain is essential for _______ and the PAS domain is essential for ________.
DNA-binding, dimerization
dimerization, DNA-binding
transphosphorylation, dimerization
DNA-binding, transphosphorylation
HIF1alpha and HIF2alpha each have _____ transactivation domain(s) (TAD).
3
2
4
1
The C-terminal transactivation domain of HIF1alpha and HIF2alpha interacts with ________ to _______ gene transcription under _________.
p300/CREB-binding protein co-activators, modulate, normoxia
p300/CREB-binding protein co-activators, modulate, hypoxia
VHL protein repressor, suppress, hypoxia
VHL protein repressor, suppress, normoxia
The von Hippel-Lindau (VHL) tumor suppressor protein binding to the ________ of HIF1alpha results in _______ of HIF1alpha and ____________________.
ODD domain, sumoylation, lysosomal degradation
ODD domain, ubiquitination, lysosomal degradation
ODD domain, sumoylation, proteasomal degradation
ODD domain, ubiquitination, proteasomal degradation
The von Hippel-Lindau (VHL) protein acts as _____ of a ubiquitin E3 ligase complex.
a ubiquitin-conjugating enzyme (E2)
a ubiquitin-activating enzyme (E1)
a specificity factor (E3) that function in substrate recognition
a substrate
How does the E3 ligase complex with von Hippel-Lindau (VHL) recognize HIF1alpha?
Proline residues 402 and 564 can be hydroxylated by prolyl hydroxylase, which binds VHL to the ODD domain
Proline residues 402 and 564 can be hydroxylated by prolyl hydroxylase, which binds VHL to the C-TAD domain
Asparagine residue 803 can be hydroxylated by prolyl hydroxylase, which binds VHL to the C-TAD domain
Asparagine residue 803 can be hydroxylated by prolyl hydroxylase, which binds VHL to the ODD domain
Which of the following statements is FALSE?
Hydroxylation by prolyl hydroxylase does not require O2 as a co-factor.
Under hypoxia, prolyl hydroxylase cannot be activated.
HIF1alpha accumulates and translocates into the nucleus.
HIF1 binds to co-activators CBP/p300 and transactivates downstream target genes
Prolyl hydroxylases are involved in HIF1alpha degradation
CBP/p300 cannot bind when_______ on HIF1alpha, therefore HIF1alpha ___________ and _________.
Proline 402 is hydroxylated, binds to another protein, transcription of different genes occurs
Asparagine 803 is hydroxylated, no transcription occurs, HIF1alpha is degraded.
Proline 402 is phosphorylated, no transcription occurs, HIF1alpha is degraded.
Asparagine 803 is phosphorylated, no transcription occurs, HIF1alpha is degraded.
Under _______ O2, HIF1alpha Proline 402, Proline 584 and Asparagine 803 are not ______, HIF1alpha binds to _________ and ________.
high, hydroxylated, CBP/p300, transcription occurs
low, hydroxylated, CBP/p300, transcription occurs
high, ubiquitinated, CBP/p300, transcription occurs
low, ubiquitination, CBP/p300, transcription occurs
Initiation of carcinogenesis
reversible epigenetic alteration
irreversible epigenetic alteration
irreversible genetic alteration
none of the above
End result of carcinogenesis progression:
changes in rate of growth
adoption of migration and invasion
anchorage independent growth
aneuploidy
What may explain cancer cell heterogeneity?
genetic/epigenetic clonal evolution
environmentally determined effects on cancer cell properties
cancer stem cell renewal and differentiation
combination of all mentioned
There are no immune cells in a tumor
True
False
Cancer cells can evade being killed by the immune system by
downregulate type I interferon signaling to reduce T-cell infiltration into the tumor and inducing T-cell exhaustion
generating hypoxic and inflammatory microenvironment to impair antigen-presenting cells (APCs) and natural killer (NK) cells
cancer cells express inhibitory cell surface proteins
cancer cells create a hypoxic environment to avoid phagocytosis by macrophages
Extracellular matrix molecules play no role in cancer progression
True
False
Loss of type I interferon signaling in stromal cells within the tumor (fibroblasts and endothelial cells)
increases tumor growth
changes ECM deposition within the tumor microenvironment
promotes angiogenesis
has no effect
Cancer cells release the following to promote tumor growth
Growth factors
Cytokines
Chemokines
Extracellular Vesicles
Intravasation
following accumulation of mutations, migrating cancer cells follow a chemokine gradient through the endothelial barrier and into circulation
cancer cells and apoptotic cancer cells are pushed into nearby vasculature
both
neither
How can macrophages help tumor cells survive in circulation?
Integrin molecules on macrophages bind to V-CAM1 on the circulating tumor cell to activate survival signaling (phosphorylation of Ezrin results in activation of PI3K/AKT pathway)
macrophages secrete fibrin to protect tumor cells
macrophages do not help circulating tumor cells
Cancer metastatic lesions
are difficult to treat and comprise of cancer cells that are different to those in the primary tumor
flourish in tissue pre-education by tumor-derived factors from the primary tumor
have altered ECM composition compared to nearby normal tissue
What are major types of histone modifications?
phosphorylation
acetylation
methylation (arginine)
Ubiquitylation
Sumoylation
The pre-metastatic niche
is created by soluble factors released by the tumor
is comprised of different cellularity and ECM deposition compared to surrounding tissue
facilitates colonization when circulating tumor cells arrive
does not affect cancer progression
